SE2550116

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1346
  • Brachypodium distachyon
  • SE2550116
  • PIF/harbinger
  • To26
  • Bd4:35760165-35760412
  • TTA
  • AGGGTATGTTTGGTTCATGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    TA G       -CAT   CAACATT    AA     -TC           TGGTTTGCCAATTTTTTGGTCAACAATTCTTGAGCCCACACTTGGCTAAAGATTTGGCAAAAATCTGTG
  AGGG  T TTTGGTT    GCC       GCCC  CCAAA   TTGGCAAAATT                                                                     
  ||||  | |||||||    |||       ||||  |||||   |||||||||||                                                                      
  TCCC  A AAACCAA    CGG       CGGG  GGTTT   AACCGTCGGGT                                                                     
AT    CG G       AACT   TTTAGAT    AC     TAT           GATTTTAAACCACGAACAAACGAAACAACGGTTTTTAAACCAACGGTTACCCTTAGATCGGTAGAGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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