Plant MITE

SE2520119

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1349
Brachypodium distachyon
SE2520119
Mutator
M2
Bd3:29412331-29412527
TATTAATTG
ATTAATTGGGGAGTGTCTATT

Secondary structure and sequence

TSD TIR

5'

3'

 T      TG  GAG  T     TATCAGTCG   A  AAA           C      CA   C     ----ATCCA    AGATTTTCTCATCCATCGAACCTA
  ATTAAT  GG   TG CTATT         TCT AG   TAATTATTTCT AGTCGA  ATC TAGCC         ATGA                        
  ||||||  ||   || |||||         ||| ||   ||||||||||| ||||||  ||| |||||         ||||                         
  TAATTA  CC   AC GATAA         AGA TC   GTTGATAAAGA TCAGCT  TAG GTTGG         TTAG                        
GT      TG  AAA  -     ---------   A  --C           A      AC   T     AAAACTAAG    CAACTCTAAGCACATTTTAATTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520119

TATTAATTGGGGAGTGTCTATTTATCAGTCGTCTAAGAAATAATTATTTCTCAGTCGACAATCCTAGCCATCCAATGAAGATTTTCTCATCCATCGAACCTACATTAATTTTACACGAATCTCAACGATTGAATCAAAAGGTTGTGATCATCGACTAAGAAATAGTTGCCTAAGAAATAGCAAAACCGTATTAATTG

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