SE2530130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1360
  • Brachypodium distachyon
  • SE2530130
  • hAT
  • Hat16
  • Bd5:9607558-9607741
  • CTTGCAAG
  • CTTGCAAGCAGTGGCGGAGCTAGCCG

Secondary structure and sequence

TSD    TIR
5'



3' 
          GT        TAG   ACCA   AA           AATC TTCTAAATTGAAATTTGCCCATATAATTTGCTAATATAATCATCTT
CTTGCAAGCA  GGCGGAGC   CCG    CTG  GCCTGGGCAAG    T                                              
||||||||||  ||||||||   |||    |||  |||||||||||    |                                               
GAACGTTCGT  CCGCCTCG   GGC    GGC  CGGTCGGGCTC    G                                              
          AC        ---   -GCG   --           ---- TTAACGGGTCCGAGGGGGTCAACTTGGAATGAATTGATTTCCTTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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