SE2550143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1373
  • Brachypodium distachyon
  • SE2550143
  • PIF/harbinger
  • To11
  • Bd2:38923799-38923972
  • TTA
  • AGGCTGCGTTTGGCATTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     GC            ------     -- TTCT ATAATCCCGTTTTTCTCACCCGCTTTTCACTATTTTCGTGTTTGGCTAACCAA
  AGGCT  GTTTGGCATTGC      GGTGG  A    C                                                     
  |||||  ||||||||||||      |||||  |    |                                                      
  TCCGA  CAAACCGTAACG      CACGA  C    G                                                     
AT     GT            GCTTGA     CG ---- ACTTGAATAAAATATTAGACGACACTTTTTTATGTGTGTTTTCATACCTTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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