Plant MITE

SE2510144

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1374
Brachypodium distachyon
SE2510144
Tc1/Mariner
St15
Bd1:38718531-38718748
TA
TACTCCCTCCGTCCCATAATATGAGACATACACGCATTCCTAGATCGTCAATTTAGCTAACTAAATAT

Secondary structure and sequence

TSD TIR

5'

3'

                         A A A    C   C               AGC   C       AAATTAAATAATTAAAAAT     CATTAGAAAGTTCTTTCGATAACA
TACTCCCTCCGTCCCATAATATGAG C T CACG ATT CTAGATCGTCAATTT   TAA TAAATAT                   TATAT                        
||||||||||||||||||||||||| | | |||| ||| |||||||||||||||   ||| |||||||                   |||||                         
ATGAGGGAGGCAGGGTATTATACTC G G GTGC TAA GATCTAGTAGTTAAA   ATT ATTTATA                   AAAGA                        
                         C C C    A   A               CTA   A       --------------CGTAC     ATTGTCTTTCATGTGGTAATCTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510144

TACTCCCTCCGTCCCATAATATGAGACATACACGCATTCCTAGATCGTCAATTTAGCTAACTAAATATAAATTAAATAATTAAAAATTATATCATTAGAAAGTTCTTTCGATAACAAATCTAATGGTGTACTTTCTGTTAAGAAACATGCATATTTAATTAATCAAATTGATGATCTAGAAATACGTGCGCGCCTCATATTATGGGACGGAGGGAGTA

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