Plant MITE

SE2550159

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1389
Brachypodium distachyon
SE2550159
PIF/harbinger
To12
Bd4:29276988-29277343
TAA
AGAGCATCTCCACTTGTCCTCCCTA

Secondary structure and sequence

TSD TIR

5'

3'

TA            C            TATTTCA     -   A   CCTT      AG          AACAATT    TGGGGTGGAACCGGCACCCAGCCGCACCCCCAAACATCGCTCCCCCAAATTTAGTTTGTCTCGCTGATAGTGGTGGCCCGTGCTGCTTTTCAGCTTCAGCCGG
  AGAGCATCTCCA TTGTCCTCCCTA       TCCGG CGC TGG    ATGGGG  GCGCCGGCGC       TGTT                                                                                                       
  |||||||||||| ||||||||||||       ||||| ||| |||    ||||||  ||||||||||       ||||                                                                                                        
  TCTCGTAGAGGT GGCGGGGGGGAT       GGGTT GCG ATT    TACCCC  CGCGGCCGCG       TTGG                                                                                                       
AA            C            TTCCGGG     T   -   ----      --          --ACTTT    GTGGGTCAGGTGAGGGGATTTAGGTTTTTCATCGGCCGCACCGTGTTCTTAAATCGACCGCGGGGGTTAGGTGAGGGATGAGTGTCCCCCCGATCGTCCCCGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550159

TAAGAGCATCTCCACTTGTCCTCCCTATATTTCATCCGGCGCATGGCCTTATGGGGAGGCGCCGGCGCAACAATTTGTTTGGGGTGGAACCGGCACCCAGCCGCACCCCCAAACATCGCTCCCCCAAATTTAGTTTGTCTCGCTGATAGTGGTGGCCCGTGCTGCTTTTCAGCTTCAGCCGGCGCCCCTGCTAGCCCCCCTGTGAGTAGGGAGTGGATTGGGGGCGCCAGCTAAATTCTTGTGCCACGCCGGCTACTTTTTGGATTTAGGGGAGTGGACTGGGTGGGTTTTTCAGCGCCGGCGCCCCCATTTAGCGTTTGGGGGGCCTTTAGGGGGGGCGGCTGGAGATGCTCTAA

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