SE2520164

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1394
  • Brachypodium distachyon
  • SE2520164
  • Mutator
  • M19
  • Bd1:68825485-68825956
  • TATAAGATA
  • ATAGAGAAAAGTACTTTTTTCGTCCCTCAACTTGTCGGAAAGTTCATTTCTCGTCCCTCAAAAACAATTCGTACTTTTTTCATCCCTCAACTTTCAAAACCGGACACTTTTAGTCCTCAAGGTTATCCGAAACGGTTTGTCTAGCCACGTGTCCGGTTTGCACTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAG                                         G   A   C              CAA      C       A        C                       -    AA    -       AC     G         G    C     GCA    ATCCC   ACCGCCGAGGCTGTTGAAATTGGCCGTCGTCGTGCTCTGGATCTCGTCCAAGCACTGGT
      ATAGAGAAAAGTACTTTTTTCGTCCCTCAACTTGTCGGAAA TTC TTT TCGTCCCTCAAAAA   TTCGTA TTTTTTC TCCCTCAA TTTCAAAACCGGACACTTTTAGT CCTC  GGTT ATCCGAA  GGTTT TCTAGCCAC TGTC GGTTT   CTTA     GTG                                                           
      ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||   |||||| ||||||| |||||||| ||||||||||||||||||||||| ||||  |||| |||||||  ||||| ||||||||| |||| |||||   ||||     |||                                                            
      TATCTCTTTTCATGAAAAAAGCAGGGAGTTGAACAGCCTTT AAG GAA AGCAGGGAGTTTTT   AAGCAT AAAAAAG AGGGAGTT AAAGTTTTGGCCTGTGAAAATCA GGAG  CCAG TAGGTTT  CCAAA GGATCGGTG ACAG CCAAA   GAGT     TCA                                                           
ATAGAA                                         A   C   A              TTA      A       C        A                       T    --    G       CA     A         G    A     --A    ----A   AAAAAGTGAATAAAAAAAAGGTTAGTTCTATACCTATTACGTCTACCTCTTCTTCATGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End