Plant MITE

SE2540174

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1404
Brachypodium distachyon
SE2540174
CACTA
Ca1
Bd2:59182859-59183657
GTG
CACTACAACACAAATGTCT

Secondary structure and sequence

TSD TIR

5'

3'

GTG        CAC    -    TGTA           GT ----------  G  AATA   TCT        -  -CTA    -- AAT   - AGGCAGAGTTTCATGTAGAGACAATGTAAGAGGCGTTATGGAAAATGTCTTAAATATAGAGACGCTAGTTGAGACATTATGGTGTAGAGACATTTTTTGAGGCATTTAATATATTGTCACAAAAGTCTGTAGAGACATGGTTTTGAGATACTTGATGAAATGACCTTATGGTATGGTTAGAGACACTATTTGAGACGTTTTATGTTGTGTAGAGACATTTTTAGCAAGTTTGAGACATGTAGTAGACTACTCATAACAATTTCATTAGGACTATAAGCACAAATTGGTATTAGGTTGAGATGGTTAGGTGAGTGTGGAC
   CACTACAA   AAAT GTCT    GAGACATTTTC  T          GA GC    TAC   TTGTCTCT AC    GAGA  C   TTT G                                                                                                                                                                                                                                                                                                                               
   ||||||||   |||| ||||    |||||||||||  |          || ||    |||   |||||||| ||    ||||  |   ||| |                                                                                                                                                                                                                                                                                                                               T
   GTGATGTT   TTTA CGGG    TATCTCTGCGA  T          CA CT    CTG   TGATATTA CA    TGTA  G   AAA C                                                                                                                                                                                                                                                                                                                               
GTG        CTC    T    ----           -- AAAAACCAAG  T  ----   ---        A  GAGA    TT ---   T TATGTGAACCATGTCACAGTGTTATGACGGTGATGCCTGTTACAGCGATACACACTACTCTGTGATTATTTTGCGGAGATAACAAAATCTGTAAAGTATTTCTGTGATATGACAGAGATGCAATTTATACTGTAAAGCATTTCTGTAACTTAACACAGAAATATCAAAAATCTGTAAAGTATTTCTGTGTTATAACAGAGATGTAAGTTACGCTGTAAAACATTTCTGTAATGTAACACAGAGATATGGGTACACGATCTTTTATATGTAACTTTTTTAGTACAACTCTGGTTAGGAGTTTGAGTTCTGGAATTCCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2540174

GTGCACTACAACACAAATGTCTTGTAGAGACATTTTCGTTGAGGCAATATACTCTTTGTCTCTACCTAGAGACAATTTTGAGGCAGAGTTTCATGTAGAGACAATGTAAGAGGCGTTATGGAAAATGTCTTAAATATAGAGACGCTAGTTGAGACATTATGGTGTAGAGACATTTTTTGAGGCATTTAATATATTGTCACAAAAGTCTGTAGAGACATGGTTTTGAGATACTTGATGAAATGACCTTATGGTATGGTTAGAGACACTATTTGAGACGTTTTATGTTGTGTAGAGACATTTTTAGCAAGTTTGAGACATGTAGTAGACTACTCATAACAATTTCATTAGGACTATAAGCACAAATTGGTATTAGGTTGAGATGGTTAGGTGAGTGTGGACTTTTCCTTAAGGTCTTGAGTTTGAGGATTGGTCTCAACATGATTTTTTCAATGTATATTTTCTAGCACATGGGTATAGAGACACAATGTAATGTCTTTACAAAATGTCGCATTGAATGTAGAGACAATATTGTGTCTTTATGAAATGTCTAAAAACTATAAAGACACAATTCAATGTCTTTACGAAATGTCATATTTAACGTAGAGACAGTATAGTGTCTTTATGAAATGTCTAAAACAATAGAGGCGTTTTATTAGTGTCTCATCACACATAGCGACATTGTCCGTAGTGGCAGTATTGTGACACTGTACCAAGTGTATCTAAAGTTATGTAGAGACAATTATAGTGTCTCTACGAACCAAAAATAGCGTCTCTATGGGCTATTTCTCTTGTAGTGGTG

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