SE2550181

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1411
  • Brachypodium distachyon
  • SE2550181
  • PIF/harbinger
  • To17
  • Bd2:52943893-52944272
  • TGA
  • AGGGCTCCTTTGATTCAAAGGAATTTCATAGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG      C         AAA         ------------       ---TT          -- ATTACTAAGGAATTTTCCATTCATAACTCGTTTGATTTGCAGGATTTGAAACCATAGGAATATTTCCTATGGACTACTTTGCATGCAATTCCAAAGGAAAATTTCCATGAGGTCCAACCTCATGGAAAATTT
  AGGGCT CTTTGATTC   GGAATTTCA            TAGGAAA     TGGAGGGTTC  T                                                                                                                                    
  |||||| |||||||||   |||||||||            |||||||     ||||||||||  |                                                                                                                                     
  TTCCGG GAAACTAAG   TCTTAAAGT            ATCCTTT     TCCTAAACTT  A                                                                                                                                    
AG      A         -CG         TTTTGTGTCCTT       TTGTA          AC GTACTGTACAACTTAGAATACCTTTAAGTTTTACATACTTACACATCATCTTCAACAAACTAACTGGTGACCTTTTTACATCTTAAAAGAATTTCCTAATGTACGATGAGTAACAACAGTATCTCTGTTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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