Plant MITE

SE2510182

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1412
Brachypodium distachyon
SE2510182
Tc1/Mariner
St2
Bd1:22261726-22261944
TA
TACTCCCTCCATTCCGGTATATGGGCCCCC

Secondary structure and sequence

TSD TIR

5'

3'

    C     A              C  C CACA   A              C       CC       AG                      G        CTTC  AT
TACT CCTCC TTCCGGTATATGGG CC C    CAT TCTAGGTTGAAGAT TAACTAA  TAACATG  TTTTATATCATAAAAATTATAT ATTAGAAA    GA  
|||| ||||| |||||||||||||| || |    ||| |||||||||||||| |||||||  |||||||  |||||||||||||||||||||| ||||||||    ||   
ATGA GGAGG AAGGCCATATACCC GG G    GTA GGATCCAACTTCTA ATTGATT  ATTGTAC  AGAATATAGTGTTTTTAATATG TAATCTTT    CT  
    T     C              C  A TTAC   G              A       AA       CA                      G        -TAT  TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510182

TACTCCCTCCATTCCGGTATATGGGCCCCCCACACATATCTAGGTTGAAGATCTAACTAACCTAACATGAGTTTTATATCATAAAAATTATATGATTAGAAACTTCGAATATTCTATTTTCTAATGGTATAATTTTTGTGATATAAGAACCATGTTAAATTAGTTAAATCTTCAACCTAGGGATGCATTGAGGCCCCATATACCGGAACGGAGGTAGTA

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