SE2550184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1414
  • Brachypodium distachyon
  • SE2550184
  • PIF/harbinger
  • To16
  • Bd1:18866097-18866371
  • TTA
  • AGGCCTTGTTTGGTGTTAGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       G           T          GT ----      -  -    - TA     --------   -GT    TGTTCACCCAAAACTCTCAAAAACCCAAAACATTGGTATGAGAAGTTTTTAATTTGGTACAAAAATG
  AGGCCTT TTTGGTGTTAG GTATTTTTTA  T    ACTAGT GT TTTG G  TTTGA        GGG   TTGG                                                                   
  ||||||| ||||||||||| ||||||||||  |    |||||| || |||| |  |||||        |||   ||||                                                                    
  TCCGGAA AAACCACGATC CAAAAACCCC  C    GATCCC TA TAGG G  AGGTT        GTG   TTTG                                                                   
AT       A           T          -A AAAA      A  A    T --     TAACTTTT   ATC    GGGTTTACCAACAAACCATCCTTCCCAATCTCCCCTAATAGGGATCAAAGGGGGGTTTTTTTTTGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3