Plant MITE

SE2520192

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1422
Brachypodium distachyon
SE2520192
Mutator
M23
Bd3:28613627-28613864
TAAATATAT
GGGTTAATTTGATATGTGGCACTACAATTTTGGCGAATT

Secondary structure and sequence

TSD TIR

5'

3'

TAAATATAT                  G    A         C     AAAAAAAACCAATGCAATTATCATCTTT          C         ATGGA A      G      TC  CTCCAATG   TAAA
         GGGTTAATTTGATATGTG CACT CAATTTTGG GAATT                            TGAAAAATGC ACTACAATT     G TTCTTT AAAAAT  CA        GGT    
         |||||||||||||||||| |||| ||||||||| |||||                            |||||||||| |||||||||     | |||||| ||||||  ||        |||     
         CCCAATTAAACTATATAC GTGA GTTAAAACC CTTAA                            ACTTTTTGCG TGATGTTAA     C AGGAAA TTTTTA  GT        CCG    
CATATAAAT                  A    C         A     ----------------------------          A         --GAG -      G      CA  -AACGCCA   TAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520192

TAAATATATGGGTTAATTTGATATGTGGCACTACAATTTTGGCGAATTAAAAAAAACCAATGCAATTATCATCTTTTGAAAAATGCCACTACAATTATGGAGATTCTTTGAAAAATTCCACTCCAATGGGTTAAAAGATGCCACCGCAATGACATTTTTGAAAGGACGAGAATTGTAGTAGCGTTTTTCAAATTCACCAAAATTGCAGTGACATATATCAAATTAACCCTAAATATAC

Copy Cancel