SE2520196

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1426
  • Brachypodium distachyon
  • SE2520196
  • Mutator
  • M14
  • Bd1:53243998-53244590
  • TTATTATTA
  • AGGGTTAATTGGATTTATGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTATT                      CTCTCTA                                       C                      C            CA        C      CTTAAG    ATAA  -   CATAAAACACATGTATTTCAGCGTGTACAACAGTATTTACCATAATACCCCTATTTATAATGTTCAGCAGTACGTTCAAGTCTTCCGGGCGCCATAAAGGTTAAAATAAAAATCAAATTTGGCCCAAAATTCAATCTTCTAAGAAAAATCTA
        AGGGTTAATTGGATTTATGCCA       TTTCACCGGTTGGAGATATGCCATTACAAAAACTTGACT GGAGAAATGCCACTCTAACTTT TTATACCTCTAT  ATGTCATT TGTTCA      ACCA    GT GTT                                                                                                                                                        
        ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||  |||||||| ||||||      ||||    || |||                                                                                                                                                         
        TCCCAATTAACCTAGATACGGT       AAGGTGGCCAACCTCTATACGGTAATGTTTTTGAACTGA CCTTTTTACGGTGAGATTGAAA AATATGGAGGTA  TACGGTAA ACAGGT      TGGT    CG GCA                                                                                                                                                        
ATTATTAT                      AATATTA                                       A                      A            AG        A      ----TA    ----  T   TATGACAGATTTATGCATATCTGTATCGAATATGCTTGTTAAAAAAGGGTAGAGTTCAGTTTGTCAAAATAAGGAGAATAAGGGGTGCGCAAGGAGTATAGGACATGGGTTGCCACCTTAGTATAATGACAAAAATAAAAGACATTAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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