SE2550198

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1428
  • Brachypodium distachyon
  • SE2550198
  • PIF/harbinger
  • To30
  • Bd1:65214741-65215042
  • TTA
  • AGGGCATCCGCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               -----         TTACTGACTCTTCACGTGATTTAGGGTCAACGGTAAAATAACACGTGCAATGATTTGTGTCTTTAAACTGACTCTAGATGATCTGTTAGCATTAAATGCGATGTTGCACAATGGTTAAAAGG
  AGGGCATCCGCAATG     GTGGAGTCA                                                                                                                          
  |||||||||||||||     |||||||||                                                                                                                          T
  TCCCGTAGGCGTTAC     GAGAATTGG                                                                                                                          
AT               AGACA         CTGAGAATAAATTTTTAACGAGTACACTTCCTTTCTCTTTAACCTCTCTCTTCTCTTAGCTAAGAAGCACTTCTCAGTGTGAGAATTTCTTTCTTAGCTGATTCTCACAATCGATTCTCAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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