SE2550207

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1437
  • Brachypodium distachyon
  • SE2550207
  • PIF/harbinger
  • To30
  • Bd3:12043108-12043396
  • TTA
  • AGGGCATCCGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                T       GCACTGACTCTCCACGTCATTTTAGAGTCAACGAAAAAATAACACGTGCAATGAGTTGTGTCTTTAATTTGGCTCTAGCTGATTTGTTAGCATTAAATGTGATGTTGTATAATGGTTAA
  AGGGCATCCGCAATGG AGAGTCA                                                                                                                       
  |||||||||||||||| |||||||                                                                                                                        
  TCCCGTAGGCGTTACC GATTGAG                                                                                                                       
AT                -       AATCGGCTGAGAATAAACTTTAAACAAATGCATTCCTTTCTTTTTATCCTCTCTCTTCTCTTAACTGAGAAGCACCTCTCAGTCTGAGAATTCCTTTCTTAGTTGATTCTCAGTTGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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