Plant MITE

SE2550208

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1438
Brachypodium distachyon
SE2550208
PIF/harbinger
To23
Bd5:19822259-19822580
TAA
AGGTAGTGTTTGGTTGAGATCACGA

Secondary structure and sequence

TSD TIR

5'

3'

TA               -G   TCA   --AC  A       TGGAATGGTTCCAAAAGTTGAGATGATTCCTGTGTTTGGTTCTTAGAACACAGAGAAGTGGAATGGAACCATATGGTTCCTCAAAAGGGAATATTCCCTCAATATGCCTAACCATCTCATTC
  AGGTAGTGTTTGGTT  AGA   CGA    TG AATGTAA                                                                                                                          
  |||||||||||||||  |||   |||    || |||||||                                                                                                                           
  TCCATCACAAACCAA  TCT   GCT    CT TGTCTTG                                                                                                                          
AA               GA   --C   CCAC  -       CCTTGCCAAGATAAGAATATCCTTACCTTACATTACCTTGCCAAGATGAAAAGATATAGGATTCTTGGTTTGTGAATCTAGTGACCAAGATGAACCTTGGTTGAGTAAGGATGTAAAAACTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550208

TAAGGTAGTGTTTGGTTGAGATCACGAACTGAAATGTAATGGAATGGTTCCAAAAGTTGAGATGATTCCTGTGTTTGGTTCTTAGAACACAGAGAAGTGGAATGGAACCATATGGTTCCTCAAAAGGGAATATTCCCTCAATATGCCTAACCATCTCATTCCTCAAAAATGTAGGAATGAGTTGGTTCCAAGTAGAACCAGTGATCTAAGTGTTTGGTTCTTAGGATATAGAAAAGTAGAACCGTTCCATTACATTCCATTCCTATAAGAATAGAACCGTTCCGTTCTGTTCCACCTCGCTCTAGAACCAAACACTACCTAA

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