SE2510210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1440
  • Brachypodium distachyon
  • SE2510210
  • Tc1/Mariner
  • St3
  • Bd1:17604750-17605009
  • TA
  • TACTACCTCTGTTCCTAAATGTAAGATGTTCTAGCTTTGTCCTAAGTCGAACTTTTTAAAGTTTGACCAAATTTGTAGAAAAATATACTGATATCTATAATATCAAATAAATATATTATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A              T                               C        G    A    A             A    G      ATA     A  -----------     A        AGAT
TACT CCTCTGTTCCTAAA GTAAGATGTTCTAGCTTTGTCCTAAGTCGAA TTTTTAAA TTTG CCAA TTTGTAGAAAAAT TACT ATATCT   ATATC AA           TAAAT TATTATGA    
|||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||| |||| ||||||   ||||| ||           ||||| ||||||||    A
ATGA GGAGGCAAGGGTTT TATTCTACAAGATCGAAACAGGATTCAGTTT AAGAATTT AAAT GGTT AAATATCTTTTTG ATGG TGTAGA   TATAG TT           ATTTA GTAGTACT    
    G              C                               A        A    -    C             G    G      -GA     A  CAATAAAAATA     G        ATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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