SE2550212

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1442
  • Brachypodium distachyon
  • SE2550212
  • PIF/harbinger
  • To3
  • Bd3:50822773-50822996
  • GAA
  • GGCTGCGTTTTTTCCAGCTTTTAGGACCAGCTTTTCCTAGAAGCTGCTCTCACCTAGCTTTCTGAAAAAGCCGCATCTTAGATTTAGCTAGGTTCCAAAGCAGTTTAGGCTAAACTAGTTTGGTAGCCTAATCAAATTTAGGTGGCGGCTTCTACAGGAAACTGGGGGAGGGCAGCTTCTCGGAGAAGCCGGTACAGAAAGATGAAAAGAACTGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
 GAA     C       C  G     AGG   A        T             A     C      AAA       AT         AGC      -     GC      G
    GGCTG GTTTTTT CA CTTTT   ACC GCTTTTCC AGAAGCTGCTCTC CCTAG TTTCTG   AAGCCGC  CTTAGATTT   TAGGTT CCAAA  AGTTTA 
    ||||| ||||||| || |||||   ||| |||||||| ||||||||||||| ||||| ||||||   |||||||  |||||||||   |||||| |||||  |||||| G
    CCGGT CAAGAAA GT GAAAG   TGG CGAAGAGG TCTTCGACGGGAG GGGTC AAGGAC   TTCGGCG  GGATTTAAA   ATCCGA GGTTT  TCAAAT 
AAGC     -       A  A     ACA   C        C             G     A      ATC       GT         CTA      T     GA      C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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