SE2510215

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1445
  • Brachypodium distachyon
  • SE2510215
  • Tc1/Mariner
  • St11
  • Bd1:34893680-34893889
  • TA
  • TACTCCCTCCATTCCAAAACACAACTCATATAGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A                          TTCT      TT   CAA  -   C  AT     CTT   ACCCGCACCCGGCCAATAACTACTCACATC
TACTCCCTCC TTCCAAAACACAACTCATATAGATTT    CATTTG  CCA   CA CTC TC  TTTCT   GGT                              
|||||||||| ||||||||||||||||||||||||||    ||||||  |||   || ||| ||  |||||   |||                               
ATGAGGGAGG AAGGTTTTGTGTTGAGTATATCTAAA    GTGAAC  GGT   GT GAG AG  AAAGA   CGG                              
          C                          -CAC      CT   TCC  C   -  -C     TCA   ACTGGTGAGTATAACCTAATTATCATTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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