SE2510224

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1454
  • Brachypodium distachyon
  • SE2510224
  • Tc1/Mariner
  • St3
  • Bd2:11817270-11817530
  • N.A.
  • TGCTCCCTCCGTTCCTAAATGTAAAAAGTCCTAGCTTTGTCCTAAGTCAAACTTCTTAAAGTTTGACTAAGTTTATAGAAAAATGTATCAACATTTAGAATATCAAATAACTATAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                        A  G                               AG                       G            G   A      ------------AA    A   TGAAAA
TGCTCCCTCCGTTCCTAAATGTAA AA TCCTAGCTTTGTCCTAAGTCAAACTTCTTAA  TTTGACTAAGTTTATAGAAAAAT TATCAACATTTA AAT TCAAAT              CTAT GTA      
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| ||| ||||||              |||| |||      A
ATGAGGGAGGCAAGGATTTACATT TT AGGATCGAAACAGGGTTCAGTTTGAAGAATT  AAACTGGTTCAAATATCTTTTTA ATGGTTGTAGAT TTG GGTTTA              GGTA CAT      
                        C  G                               AG                       G            G   A      ATCAAAATAATCTA    G   TATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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