SE2550228

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1458
  • Brachypodium distachyon
  • SE2550228
  • PIF/harbinger
  • To11
  • Bd5:5763967-5764140
  • TAA
  • AGGCTTCATTTGGCATTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      CA           ---  T -     TCATAATCCCCTTTTTTTCACCCGATTTTCACTATTTTCGTGTCTGGCTAACCAA
  AGGCTT  TTTGGCATTGC   GG G GATTA                                                       
  ||||||  |||||||||||   || | |||||                                                       C
  TCCGAG  AAACCGTAACG   TG A AGTAC                                                       
AA      TC           ACT  - C     GCGACTTGAATAAAATATTAGACGACACCTTTTTATGTGTGCTTTCATCCCTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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