Plant MITE

SE2530233

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1463
Brachypodium distachyon
SE2530233
hAT
Hat21
Bd2:6055649-6055832
TCTTTTGG
GGCAGTGGCGGAGCTAGCCC

Secondary structure and sequence

TSD TIR

5'

3'

TCTTTT    GT          --      --  TGG  -   TGGGGAAAATACACTGTAAACTAAATTTTGTCCAATTTTTTTTGCCAAGTTAA
      GGCA  GGCGGAGCTA  GCCCAC  TA   GA GCC                                                     
      ||||  ||||||||||  ||||||  ||   || |||                                                      
      CTGT  CCGCCTCGGT  CGGGCC  TG   GG CCG                                                     
GGTTTT    AC          TC      GG  ---  G   TTAACGGGTCCGAGGTGGTTAACTTGGGGGAAATCAGTTACGTTTGTCTCACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530233

TCTTTTGGCAGTGGCGGAGCTAGCCCACTATGGGAGCCTGGGGAAAATACACTGTAAACTAAATTTTGTCCAATTTTTTTTGCCAAGTTAATCACTCTGTTTGCATTGACTAAAGGGGGTTCAATTGGTGGAGCCTGGGCAATTGCCGGGGTGGCCGGGCCTTGGCTCCGCCCATGTCTTTTGG

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