Plant MITE

SE2550256

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1486
Brachypodium distachyon
SE2550256
PIF/harbinger
To21
Bd3:2520712-2520990
TAA
AGGCTAGTCATAGTG

Secondary structure and sequence

TSD TIR

5'

3'

TA     A         CAAGCAACT  - A       AT      CAACTAAGCATTTTGGTGACATGGCATGGCAATAAATGGAGAAAGAGAGGGAGGTGGTAACTAGATATGTTACCATAATACCACACAAATCAAGACAAGA
  AGGCT GTCATAGTG         TG G TAGTAAC  AGATGC                                                                                                    
  ||||| |||||||||         || | |||||||  ||||||                                                                                                     
  TCCGA CAGTATCAC         CC T CATTGAA  TCTCAT                                                                                                    
AA     C         ---------  C -       --      CATTGTACGTATACAATGATGAGATTCAATGGTGGAAGTATCACCAATCATTGAATACACACCATAGTACGTAACACAGTAATTAACAAAACATCTGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550256

TAAGGCTAGTCATAGTGCAAGCAACTTGGATAGTAACATAGATGCCAACTAAGCATTTTGGTGACATGGCATGGCAATAAATGGAGAAAGAGAGGGAGGTGGTAACTAGATATGTTACCATAATACCACACAAATCAAGACAAGATAAGTCTACAAAACAATTAATGACACAATGCATGATACCACACATAAGTTACTAACCACTATGAAGGTGGTAACTTAGAGTAGTAACATATGCATGTTACTACTCTAAGTTACTCCCCACTATGACCAGCCTAA

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