SE2550257

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1487
  • Brachypodium distachyon
  • SE2550257
  • PIF/harbinger
  • To4
  • Bd1:67347505-67347702
  • TTA
  • AGGCCCTGTTTGTTTGGTCTTCTGCTTCAGCTTTTAGTGCTTCTAGCAAACTCAAAAGCACTTCTCCCATTTACACAGAAGCACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 T      C          A      C      A          C      CA        ---------        AAAAACA
  AGGCCCTGTTTGTTTGG CTTCTG TTCAGCTTTT GTGCTT TAGCAA CTCAAAAGCA TTCTCC  TTTACACA         GAAGCACC       
  ||||||||||||||||| |||||| |||||||||| |||||| |||||| |||||||||| ||||||  ||||||||         ||||||||       C
  TCCGGGACAAACAAACC GAAGAC AAGTCGAAAA CACGAA ATCGTT GAGTTTTCGT AAGAGG  AAATGTGT         CTTCGTGG       
AT                 C      A          C      A      A          A      AC        ACTTCGACT        AGATCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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