SE2550258

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1488
  • Brachypodium distachyon
  • SE2550258
  • PIF/harbinger
  • To11
  • Bd4:32338772-32338945
  • TTA
  • AGGGTGAGTTTGGCATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G G            ---  G GGATTATGATAATCCAGCTTTTCCAACCAGCTTTTGTCTATTTTCGTTTTTGACTAACCAAC
  AGG T AGTTTGGCATTG   AG T                                                              
  ||| | ||||||||||||   || |                                                               
  TCC A TCAAACCGTAAC   TT G                                                              
AT   G G            GAC  - ACACGACGCGACTTGAATAAAATATTAGATAAAACCTTTTTATTTGTGCTTTCATCCCTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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