Plant MITE

SE2550265

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1495
Brachypodium distachyon
SE2550265
PIF/harbinger
To3
Bd1:11696249-11696473
AAT
TGGGTGCGTTCTTTTTGGCTTCTTGGACCGGCTTCTCCTAGAAGCTGGCCTCACCTAGCTTCCTGGAGAAGCCGC

Secondary structure and sequence

TSD TIR

5'

3'

AA     GC              C      C        CT        G    A        CC            GTCACAAATTTAG      TTTCAAAGTAGTTTAGGCCAAA
  TGGGT  GTTCTTTTTGGCTT TTGGAC GGCTTCTC  AGAAGCTG CCTC CCTAGCTT  TGGAGAAGCCGC             CTAGAC                      
  |||||  |||||||||||||| |||||| ||||||||  |||||||| |||| ||||||||  ||||||||||||             ||||||                      C
  ACCCG  CAAGAAAAGCCGAA GACCTG CCGAAGAG  TCTTCGAC GGAG GGATCGAA  ACCTTTTCGGCG             TGGATT                      
TA     GT              A      A        AC        A    A        AA            ------------G      TAAACTAATCCGATGGTTTGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550265

AATGGGTGCGTTCTTTTTGGCTTCTTGGACCGGCTTCTCCTAGAAGCTGGCCTCACCTAGCTTCCTGGAGAAGCCGCGTCACAAATTTAGCTAGACTTTCAAAGTAGTTTAGGCCAAACTAGTTTGGTAGCCTAATCAAATTTAGGTGGCGGCTTTTCCAAAAAGCTAGGAGAGGACAGCTTCTCAGAGAAGCCAGTCCAGAAAGCCGAAAAGAACTGGCCCAAT

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