SE2520268

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1498
  • Brachypodium distachyon
  • SE2520268
  • Mutator
  • M2
  • Bd1:34948599-34948806
  • ATAAAATAT
  • TATGGGAGTGTCTATTTCTCAGTCGCCTAAGAAATAGTTATTTCTCAGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAAA   G  -AG  T        C  T  C  A        TT      C    --AACAAT     CCA  -------    CAAGATTTTCTTATCCATTGGACCT
      TAT GG   TG CTATTTCT AG CG CT AGAAATAG  ATTTCT AGTC        TGTAG   TC       CAAT                         
      ||| ||   || |||||||| || || || ||||||||  |||||| ||||        |||||   ||       ||||                          
      ATA CC   AC GATAAAGA TC GC GA TCTTTATT  TAAAGA TCAG        GTTGG   AA       TTAG                         
TATAAA   G  AAA  -        A  C  T  C        GT      A    CCACTATT     ---  AAATAAG    TAACTCTAAGCACATTCTAATTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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