SE2510269

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1499
  • Brachypodium distachyon
  • SE2510269
  • Tc1/Mariner
  • St3
  • Bd4:3053876-3054137
  • TA
  • TACTCCCTCCGTTCCTAAATGTAAGAAGTCCTAGCTTTGTCCTAAGTCAAACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
    C                                                 CTTA                          C  CC           CTCCAAGTAAGTTT         ----        TATA
TACT CCTCCGTTCCTAAATGTAAGAAGTCCTAGCTTTGTCCTAAGTCAAACTT    AAGTTTGACCAAGTTTATAGAAAAAT TA  AATATCTATAA              TATTAAGTC    TATCATGA    
|||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||  |||||||||||              |||||||||    ||||||||    T
ATGA GGAGGTAAGGATTTACATTCTTCAGGATCGAAACAGGGTTCAGTTTGAA    TTCAAACTGGTTCAAATATCTTTTTA AT  TTATAGATGTT              ATAGTTTAG    ATGGTGCT    
    T                                                 AAAG                          T  CA           -------------T         TCAT        TCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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