SE2520273

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1503
  • Brachypodium distachyon
  • SE2520273
  • Mutator
  • M13
  • Bd2:16441409-16441864
  • TTCAAATTT
  • GAGTAAATTTCACGAAACCACTGTTTTTGTGGTAGCCGTGTCGCTGAACCACAGCTAACGGAAAACCGTTCGCAGAACCACACATTTTGAATCAAATTGTCTTAGCCAGACCGAAAGCGAGTGGTTTGACGATTTTGCTTGTTTTCTTGCAGGTGTGCCCACCTGTTGTACGCCACGTCAGCC

Secondary structure and sequence

TSD    TIR
5'



3'
TTCAAATTT           AC        T      -GT     C            C     C     G               A             A    A             A      G  A        A  A        -     C    A    -T         T  T      C  CA   CCAAC    -----C   ACCCATTAGCCCGCGATTAAA
         GAGTAAATTTC  GAAACCAC GTTTTT   GGTAG CGTGTCGCTGAA CACAG TAACG AAAACCGTTCGCAGA CCACACATTTTGA TCAA TTGTCTTAGCCAG CCGAAA CG GTGGTTTG CG TTTTGCTT GTTTT TTGC GGTG  GCCCACCTG TG ACGCCA GT  GCC     TCGA      CTG                     
         |||||||||||  |||||||| ||||||   ||||| |||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||| |||||| || |||||||| || |||||||| ||||| |||| ||||  ||||||||| || |||||| ||  |||     ||||      |||                     C
         CTCATTTAAAG  TTTTGGTG CAAAAA   CCGTC GCACAGCGACTT GTGTC ATTGT TTTTGGCAAGCGTCT GGTGTGTAAAACT AGTT AACAGAGTTGGTC GGCTTT GC CACCAAAC GC AAAACGAA TAAAA AATG CCAC  CGGGTGGAC GC TGTGGT CA  CGG     AGCT      CGC                     
TTTAAACTT           CA        C      ACC     A            A     A     A               C             C    C             G      G  C        C  C        A     A    G    CC         C  C      A  TC   -----    TTTGAA   CCTCACTCTTCCCCCTATCCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End