SE2530279

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1509
  • Brachypodium distachyon
  • SE2530279
  • hAT
  • Hat3
  • Bd2:16996656-16997260
  • GATTAAGC
  • TTAAGCCACCGGCGGATCCATAGGGTGG

Secondary structure and sequence

TSD    TIR
5'



3'
GA    G   CC       -----------CC         C         --------- CATGGACCACCCTGAAAATACATCCCGTATACATATACACTAGTGTATCTTAAACCCACCAAAAAAAAAATCAGCCCGAGCAGATAGCTCATTTTCTCGGCCAGTTCTCGTTTTCTTTCTGTTGTGTAGTGTACGCGTCATCACGTCAGATCGGGTCTTGTAGCAGCCTAGCGATCGATCACAAGAAGTTGGCATCGTATTGTATTTTTGCCGAGCAGACGAGCATGAGCAGGTAACATCGCATAGTATTT
  TTAA CCA  GGCGGAT             ATAGGGTGG CAGGGTGGT         C                                                                                                                                                                                                                                                           
  |||| |||  |||||||             ||||||||| |||||||||         |                                                                                                                                                                                                                                                           C
  AATT GGT  CCGCCTA             TGTCCCACC GGTCACATA         A                                                                                                                                                                                                                                                           
CG    A   CA       TATCCAAAAACTC         A         TTTAAAAAT GGGTTATATTTAATATTGGTCGTTTAAAAATGGAGTTTGTATGATCATCATAACTTAAACCCTTCTCTTTTTTTGCCGTAACCTTGTTAAAACGCTATTAAAGTTAAGCTAGTTACTCGTTTAGAATTAAGCTAAGTTACTTTCTGGCTCTTTTTACAGCGGCCGAGGCACATTCGACGACGGAGCAGTGTACGAGTGCCACTGCTTCGCATACAAATGGCAGGCGACCGTCAGTTGCTACTACTACTGCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End