SE2520291

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1521
  • Brachypodium distachyon
  • SE2520291
  • Mutator
  • M5
  • Bd2:92140-92358
  • AAAAAAATA
  • GGTGTGGCTATTTCTAAGTCGTCTGTTTTTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAAATAG   GTG      TCT                  AAAATGAGCC   A              TTCAGAACC     ATTA    C     GTCATCTCCATTCTCTCATCTC
          GGT   GCTATT   AAGTCGTCTGTTTTTTAA          TTA ATATTAGTCGACGT         GTTAG    AGAT AGAGG                      
          |||   ||||||   ||||||||||||||||||          ||| ||||||||||||||         |||||    |||| |||||                      T
          CCA   CGATAA   TTCAGCAGACAAAAAATT          AAT TATAGTTAGCTGTA         CAATC    GGTA GCCTA                      
AATAAAAAAG   AAA      CTC                  ----------   C              ---------     ----    -     GAATTAGGTTGCTATCGTTCGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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