SE2520292

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1522
  • Brachypodium distachyon
  • SE2520292
  • Mutator
  • M2
  • Bd2:29624424-29624631
  • ATAAGATAA
  • GGTTTTGCTATTTCTTATGCGACTGAGAAATAACTATTTCTCAATCGATAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAGATAAC  TTT  -         ATG  A          AC         A        AACAA   TT G       CAC       CGTG  AGA      TAG
          GG   TG CTATTTCTT   CG CTGAGAAATA  TATTTCTCA TCGATAAT     CCT  T ATTCAAT   TGAGATT    TA   TTATTG   
          ||   || |||||||||   || ||||||||||  ||||||||| ||||||||     |||  | |||||||   |||||||    ||   ||||||    
          CC   AC GATAAAGAG   GC GATTCTTTAT  ATAAAGAGT AGTTGTTA     GGA  G TAGGTTA   ATTCTAA    AT   GGTAGC   
 AATAGAATA  CTC  A         CCA  G          CA         C        -----   TC G       ---       AAGA  --A      CCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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