SE2510297

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1527
  • Brachypodium distachyon
  • SE2510297
  • Tc1/Mariner
  • St14
  • Bd2:46817088-46817323
  • TA
  • TACTCCCTCCATTCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A      AAAAATTGA                        AC                        A    T                 ----C  C AGTATTATGAAGTACTT
TACTCCCTCC TTCCTT         CATATTAGTTTTCATTAAGACAAG  TTTGATCACAAATTACTATGTTAA GTGT GTTTATATGACATGAAA     CA A                 
|||||||||| ||||||         ||||||||||||||||||||||||  |||||||||||||||||||||||| |||| |||||||||||||||||     || |                  
ATGAGGGAGG AAGGAA         GTATAATCGAAAGTAATTCTGTTC  AAACTGGTGTTTAATGATACAGTT CACA CAAATATACTGTACTTT     TA G                 
          C      ---------                        CA                        C    C                 AATCA  - CGATCTAAGCAATAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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