Plant MITE

SE2520302

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1532
Brachypodium distachyon
SE2520302
Mutator
M2
Bd2:13715554-13715762
CCCTCATAT
ATATGGGAGTGTCTATTTCTCAGTCGCCTAAGAAATAGTTATTTATCCGTCGACAATCATAACC

Secondary structure and sequence

TSD TIR

5'

3'

CCCTC       A   -----T        C  T  C  A              A   -     CA  C      ----A   A  GAAGATTTTCTTATCCATCGGAGCTAC
     ATATGGG GTG      CTATTTCT AG CG CT AGAAATAGTTATTT TCC GTCGA  AT ATAACC     TCC AT                           
     ||||||| |||      |||||||| || || || |||||||||||||| ||| |||||  || ||||||     ||| ||                            
     TATACTC CGC      GATAAAGA TC GC GA TTTTTATTGATAAA GGG CAGCT  TA TGTTGG     CTT AG                           
            C   CAAAAC        A  T  T  C              -   T     AC  T      AAAAA   -  TCAGTAACTCTAAGCACATTCTAACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520302

CCCTCATATGGGAGTGTCTATTTCTCAGTCGCCTAAGAAATAGTTATTTATCCGTCGACAATCATAACCATCCAATGAAGATTTTCTTATCCATCGGAGCTACATCAATCTTACACGAATCTCAATGACTGATTCAAAAAGGTTGTTATCATCGACTGGGAAATAGTTATTTTTCAGTCGTCTAAGAAATAGCAAAACCGCCCTCATAT

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