Plant MITE

SE2510309

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1539
Brachypodium distachyon
SE2510309
Tc1/Mariner
St4
Bd2:20602448-20602690
TA
TACTACCTCCGTCCAACAATAGGGGGCGTATTAGCTTTCCTTTGACCAATGCTTTGACCACAAATTACTTTATTAATATATAATTATATGACATAGATTCATATCCAT

Secondary structure and sequence

TSD TIR

5'

3'

    A                             CT   CT        TG                      T     ATA    -TA   CA    T     T    ----TATAT    AC
TACT CCTCCGTCCAACAATAGGGGGCGTATTAG  TTC  TTGACCAA  CTTTGACCACAAATTACTTTAT AATAT   ATTA   TGA  TAGA TCATA CCAT         TCCT  
|||| |||||||||||||||||||||||||||||  |||  ||||||||  |||||||||||||||||||||| |||||   ||||   |||  |||| ||||| ||||         ||||  T
ATGA GGAGGCAGGTTGTTATCCCCCGTATAATC  AAG  AACTGGTT  GAAACTGGTGTTTAATGAAGTA TTATA   TGAT   ACT  GTTT AGTAT GGTA         AGGA  
    G                             CC   CC        CG                      C     CAC    TAC   -A    T     T    TTCGTTTAT    AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510309

TACTACCTCCGTCCAACAATAGGGGGCGTATTAGCTTTCCTTTGACCAATGCTTTGACCACAAATTACTTTATTAATATATAATTATATGACATAGATTCATATCCATTATATTCCTACTCAAGGATATTTGCTTATGGTTATGATTTTGATCACATTAGTCACATATTCATGAAGTAATTTGTGGTCAAAGGCTTGGTCAACCGAACCCTAATATGCCCCCTATTGTTGGACGGAGGGAGTA

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