Plant MITE

SE2550312

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1542
Brachypodium distachyon
SE2550312
PIF/harbinger
To34
Bd3:51580290-51580643
TTA
AGGGCATCTCCAACGGAACCCT

Secondary structure and sequence

TSD TIR

5'

3'

TT             C  ---AA    TCAAA       AT  GTTCAAATC      TA      TACA   GCAAAATACACAACCCAATGAGGGAACCCCCATTTGTCCAAAAGTGGTCCACACCCTTCATATCTTTCCCAAATTTGGGGAGAGTATGGGGAGTCCCCATTTGTGCAAAACT
  AGGGCATCTCCAA GG     CCCT     TCCTCCC  TT         TGTCCA  TGAGGG    TGA                                                                                                                
  ||||||||||||| ||     ||||     |||||||  ||         ||||||  ||||||    |||                                                                                                                 
  TCCCGTAGAGGTT CC     GGGA     AGGAGGG  AA         ACAGGT  ACTCCC    CAG                                                                                                                
AT             C  ACTCG    TAAAC       GT  ---------      CA      ----   AAACCTGTTTATTCACACTTGTTTTATAGTTCAACAGGTTACTATTGGAGGTAAATAGAAAAGACTCAGATACTGTACACCAGGTTCTTGTGTTCACCTGTTACAAACCTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550312

TTAGGGCATCTCCAACGGAACCCTTCAAATCCTCCCATTTGTTCAAATCTGTCCATATGAGGGTACATGAGCAAAATACACAACCCAATGAGGGAACCCCCATTTGTCCAAAAGTGGTCCACACCCTTCATATCTTTCCCAAATTTGGGGAGAGTATGGGGAGTCCCCATTTGTGCAAAACTCATCCAAACATTGTCCACTTGTGTTCTTGGACCACATGTCATAGACTCAGAAAAGATAAATGGAGGTTATCATTGGACAACTTGATATTTTGTTCACACTTATTTGTCCAAAGACCCCTCAACTGGACAAATGGGGAGGACAAATAGGGGCTCACCCTTGGAGATGCCCTTA

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