Plant MITE

SE2510319

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1549
Brachypodium distachyon
SE2510319
Tc1/Mariner
St3
Bd2:44569806-44570065
TA
TACTACCTCCTTTCCTAAATATAAGATGTTGTAGTTTTGTCCTAAGTCAAACTTCTTAAAGTTTGACCAATCTTATAGAAAAACGTAATAATATTTATAATATCAAATAAGTATATTATGAA

Secondary structure and sequence

TSD TIR

5'

3'

    A     T                   G                    C             A     C           C   A              T    -----------       A       GAT
TACT CCTCC TTCCTAAATATAAGATGTT TAGTTTTGTCCTAAGTCAAA TTCTTAAAGTTTG CCAAT TTATAGAAAAA GTA TAATATTTATAATA CAAA           TAAGTAT TTATGAA   
|||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||||||| ||||           ||||||| |||||||    
ATGA GGAGG AAGGATTTGTATTCTACAA ATTGAAACAGGATTCAGTTT AAGAATTTCAAAT GGTTG AATATCTTTTT TAT GTTGTAGATGTTGT GTTT           ATTTATG AGTATTT   
    G     C                   G                    T             A     A           A   G              -    TTAATCAAATA       A       ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510319

TACTACCTCCTTTCCTAAATATAAGATGTTGTAGTTTTGTCCTAAGTCAAACTTCTTAAAGTTTGACCAATCTTATAGAAAAACGTAATAATATTTATAATATCAAATAAGTATATTATGAAGATATATTTATGAAGTATTTAATAAACTAATTTTTGTGTTGTAGATGTTGGTATATTTTTCTATAAAGTTGGATAAACTTTAAGAATTTTGACTTAGGACAAAGTTAGAACATCTTATGTTTAGGAACGGAGGGAGTA

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