SE2540324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1554
  • Brachypodium distachyon
  • SE2540324
  • CACTA
  • Ca2
  • Bd5:19477995-19478247
  • GCA
  • GCACACTATCTCACGGTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
   A      C         ---       CTC   CTATGCTAGCCGCACTTTGTTCAAATGTAGATAATTTTGGTTTTTAATCGCACTTTTAGCACTTCAACCGCAGATTTTGTCAATAAAAATGCAT
 GC CACTAT TCACGGTAG   ACATTTG   GCA                                                                                              
 || |||||| |||||||||   |||||||   |||                                                                                              C
 CG GTGATG AGTGCCATC   TGGTCTG   CGT                                                                                              
A  -      C         TAA       ---   AAAATTTCACGCAGTTAAACCGAAGTTTTACGTAGTTTAAATATAAACAGCGTAAAATTTTCACAACTTATATGAGCACAACCTTTTTTATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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