SE2550328

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1558
  • Brachypodium distachyon
  • SE2550328
  • PIF/harbinger
  • To15
  • Bd5:3747654-3747973
  • TAA
  • AGGGCTCATTTGATTCAAAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      CA        AA    TTTTCA      TTT       ---------T     --  --    GGATTTTTTCCTATATGAGTTGTTTGATTTGTAGGATTGAATCCCGTGGAAAATTTTCCTAAGGATTTGACTGCACTACATTTCATAGGAATTTTTCC
  AGGGCT  TTTGATTC  AGGA      TAGGGA   TGCAGGA          TTGAA  TC  CTTA                                                                                                  
  ||||||  ||||||||  ||||      ||||||   |||||||          |||||  ||  ||||                                                                                                  A
  TCCCGG  AAACTAAG  TCCT      ATCCTT   ATGTCCT          ACATC  AA  TTAC                                                                                                  
AA      AG        CG    ------      TTT       TATCCTTTTG     AT  CG    AGTACCGGTAAGCTTTGGATGTACTAACACCAATCTGGTTACAAACAAACTAACTCGTGTCCTTTTTGTTTCCTTAAACTTTTTCTCCAACCTCACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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