SE2550337

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1567
  • Brachypodium distachyon
  • SE2550337
  • PIF/harbinger
  • To37
  • Bd1:49135536-49135773
  • TAA
  • AGGGGCTGTTTGGATAGTGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     CTG       AG     AATATG           TTTT     CATGA        TTGGTTTTTGTTTGGATTGTTGCCAATTTTTTGACATGTCAATGCTTCCCTTGCCATT
  AGGGG   TTTGGAT  TGGCC      TGCCCTACCAA    TTGGC     CCAAATGG                                                          
  |||||   |||||||  |||||      |||||||||||    |||||     ||||||||                                                          C
  TCCCC   AAACCTA  ATCGG      ATGGGATGGTT    AACCG     CGGTTAAA                                                          
AA     AAA       -A     ATCCAA           -TTC     ---AT        AAACCAGTACGAAAACGAACGGGTTCTAAACCGGTTGTAACCGTTCTTTTTACTTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3