SE2550346

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1576
  • Brachypodium distachyon
  • SE2550346
  • PIF/harbinger
  • To1
  • Bd2:24727872-24728117
  • TAA
  • AGGGTGTGTTTGGTTGGGAGCCAACACTAGCCATGCCAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 GA     CA      A        --A      AACCAATGATTTTTTGGCTCTTGTTTGGTTTGTTGCCAAAAATTTGGTTGCCAATGTGAAGTACTACTTCTC
  AGGGTGTGTTTGGTTGG  GCCAA  CTAGCC TGCCAAAT   ATTGGC                                                                        
  |||||||||||||||||  |||||  |||||| ||||||||   ||||||                                                                        A
  TCCCACACAAACCAACC  CGGTT  GATCGG ATGGTTTA   CCGTTC                                                                        
AA                 -A     TA      G        CAC      TTAACCGAACGGTTAAAAAACCGGTTGTTAAACTGTTGAGAGTGAAACGGTTGATAAACCGTTCTTATACTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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