SE2510356

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1586
  • Brachypodium distachyon
  • SE2510356
  • Tc1/Mariner
  • St8
  • Bd1:73140093-73140330
  • TA
  • TACTCCCTCCGTTCCTAATTAATTGGCACCGGCTGTTTTGCAAAGAAGCCCCTGTAAATTTCCGAAATAAACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                           A                             A                    TCC       ATCGGAACTTCTGCAAAAAACCCTGTTGTTTTT
TACTCCCTCCGTTCCTAATTAATTGGC CCGGCTGTTTTGCAAAGAAGCCCCTGTAA TTTCCGAAATAAACCTGCAG   AAGTTCT                                 
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||                                  
ATGAGGGAGGCAAGGATTAATTAACCG GGCCGACAAAACGTTTCTTTGGGGACATT AAAGGCTTTATTTGGACGTC   AGGTGTA                                 
                           C                             -                    ---       GAAGTTAATTTGCACCTGACGCGCAACTAAAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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