SE2520358

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1588
  • Brachypodium distachyon
  • SE2520358
  • Mutator
  • M2
  • Bd3:41195666-41195873
  • TTTCATTCA
  • GGGAGTGTCTATTTCTCAGTCGTCTAAGAAATAGTTATTTCTCAGTCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTCATTCA  GAG  T        C  T  T  A                C      ---CAA    AGCCATCCAATGAAGATTTTCTTATCCATCCGACCTG
          GG   TG CTATTTCT AG CG CT AGAAATAGTTATTTCT AGTCGA      TCGT                                     
          ||   || |||||||| || || || |||||||||||||||| ||||||      ||||                                     C
          CC   AC GATAAAGA TC GC GA TCTTTATTGATAAAGA TCAGCT      GTTG                                     
ATTTACTTTG  AAA  -        A  C  T  C                A      ACTGTT    GAAAACTAAGTTAGTAACTCTAAGCACATTCTAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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