Plant MITE

SE2550360

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1590
Brachypodium distachyon
SE2550360
PIF/harbinger
To33
Bd1:20548283-20548507
TTA
AGGCCCTGTTTGGTTGGGCTTAAAAATGCTTTCTGACTTTTGGCTTATAAGCCACAAAAGCACCAAATTAGGTGCTTTCGGCTTTGGCTTTTGACATTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

TT                         A     T                                A  T   G      C             ----------GA        TTGA
  AGGCCCTGTTTGGTTGGGCTTAAAA TGCTT CTGACTTTTGGCTTATAAGCCACAAAAGCACC AA TAG TGCTTT GGCTTTGGCTTTT            CATTTGAC    
  ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||            ||||||||     
  TCCGGGACAAACCAACCCGAATTTT ACGAA GACTGAAAACCGAATATTCGGTGTTTTCGTGG TT ATC ACGAAA CTGAAACCGAAAA            GTAGATTG    
AT                         G     -                                A  T   A      A             ACGAATAAGGTA        TTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550360

TTAGGCCCTGTTTGGTTGGGCTTAAAAATGCTTTCTGACTTTTGGCTTATAAGCCACAAAAGCACCAAATTAGGTGCTTTCGGCTTTGGCTTTTGACATTTGACTTGATATTGTTAGATGATGGAATAAGCAAAAAGCCAAAGTCAAAAGCAACTATTTAGGTGCTTTTGTGGCTTATAAGCCAAAAGTCAGAAGCAGTTTTAAGCCCAACCAAACAGGGCCTTA

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