SE2550376

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1606
  • Brachypodium distachyon
  • SE2550376
  • PIF/harbinger
  • To38
  • Bd4:38965531-38965796
  • TAA
  • AGGCTGGTCATAGTGCTAGTAACAAAGGTAGTATCATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CT       --A    A          A        AAG ATTTGGATGATGTGGCACATCATTAATGAAGAAAAAGAGTGAAGTAGTATCATAATATGATACCGGTAACATAGCGTTT
  AGGCTGGTCATAGTG  AGTAACA   AGGT GTATCATGCA TGCCACAT   C                                                                               
  |||||||||||||||  |||||||   |||| |||||||||| ||||||||   |                                                                                
  TCCGACCAGTATCAC  TCATTGT   TCCA CATAGTACGT ATACTATG   A                                                                               
AA               CC       ATC    C          -        --- TGAGATACAATGATGGAAGTATTACGTACCATAGTATTCTGGGAGTAAATAATTAAATGTTCTGTGTATTACGGAGCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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