Plant MITE

SE2550378

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1608
Brachypodium distachyon
SE2550378
PIF/harbinger
To14
Bd2:36497318-36497642
TAA
ACAGCCCGTTTGGTAACCATC

Secondary structure and sequence

TSD TIR

5'

3'

TA     C         A            -   -  T   ---       G   TGAAATCCAATTTTTGATAGGATTTCATTTGGTTGAATTTGAATTCATTGTTCAAAGATCATGTTTGTCTACCACATGGATTTGTAGAGTGAGAGACAATTCCAGAGAAAT
  ACAGC CGTTTGGTA CCATCCTTTCAT TTC AT TGG   TAGAAAT AAA                                                                                                               
  ||||| ||||||||| |||||||||||| ||| || |||   ||||||| |||                                                                                                                
  TGTCG GCAAACCAT GGTAGTAAACTC AAT TT AAG   TTAAGTA AAG                                                                                                               
AA     A         G            G   C  -   TCC       -   TTTAAGGTCTTTGCTTGAACAAACCAACCGTGCCTTAACCGGTGTCCTTAAATTAGAGTTTAAAGTACCTTAACATGATATTGATTAGGGTTAAGGAGAGGTTTTCGGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550378

TAACAGCCCGTTTGGTAACCATCCTTTCATTTCATTTGGTAGAAATGAAATGAAATCCAATTTTTGATAGGATTTCATTTGGTTGAATTTGAATTCATTGTTCAAAGATCATGTTTGTCTACCACATGGATTTGTAGAGTGAGAGACAATTCCAGAGAAATGATGGCTTTTGGAGAGGAATTGGGATTAGTTATAGTACAATTCCATGAAATTTGAGATTAAATTCCTGTGGCCAATTCCGTGCCAACCAAACAAGTTCGTTTCTGGAATTTGAAATGAATTCCTGAATTCTAAGCTCAAATGATGGGTACCAAACGAGCTGTAA

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