Plant MITE

SE2550380

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1610
Brachypodium distachyon
SE2550380
PIF/harbinger
To14
Bd2:34425087-34425406
TTA
TACAGCTCGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

T             ACAA   -AGAAT    -   A -    TAG        TCCAATTTTTGATAGGATTTCATTTGGTTGAATTTGAATCCCGGGTTCAAAAATCATGTTTGTCTACCACATGGGATTGTAGAGTGAGAGACAAATCCAGAGAAATGATG
 TACAGCTCGTTTG    CCA      TCAT TTC T TTGG   AAATGAAA                                                                                                              
 |||||||||||||    |||      |||| ||| | ||||   ||||||||                                                                                                              G
 ATGTCGAGCAAAC    GGT      ACCG ATC T AAGA   CCTTAAGT                                                                                                              
A             CATA   AGTAAA    T   - T    ---        AAAACTTAAGGTCTTTGGTTGAACAAACCAACCGTGCCTTAACCGGTGTCCTTAAGTTAGAGTTTAAGGTACCTTAGAGTGATAGTGATTGGGCTTAAGGAGAGATTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550380

TTACAGCTCGTTTGACAACCAAGAATTCATTTCATTTGGTAGAAATGAAATCCAATTTTTGATAGGATTTCATTTGGTTGAATTTGAATCCCGGGTTCAAAAATCATGTTTGTCTACCACATGGGATTGTAGAGTGAGAGACAAATCCAGAGAAATGATGGCTTTTAGAGAGGAATTCGGGTTAGTGATAGTGAGATTCCATGGAATTTGAGATTGAATTCCTGTGGCCAATTCCGTGCCAACCAAACAAGTTGGTTTCTGGAATTCAAAATGAATTCCAGAATTCTATGCCAAAATGATGGATACCAAACGAGCTGTAA

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