Plant MITE

SE2510391

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1621
Brachypodium distachyon
SE2510391
Tc1/Mariner
St11
Bd3:42078285-42078495
TA
TACTCCCTCCGTTCCACAAAACACCTCATATAGATTT

Secondary structure and sequence

TSD TIR

5'

3'

                       C             -GT   ------   -  ACCAAAGTAGCTCTCGTTTCTAGTGCCTGACCACTCATATTGGATTAGTATTAA
TACTCCCTCCGTTCCACAAAACA CTCATATAGATTT   GCA      CTT GG                                                      
||||||||||||||||||||||| |||||||||||||   |||      ||| ||                                                      A
ATGAGGGAGGCAAGGTGTTTTGT GAGTATATCTAAA   CCC      GGT TT                                                      
                       T             AAA   AAACAA   G  ATATCGAACAAAAAGAGAACCGAGGGCGTGGGTCGGTTATTATCAAGTGTAGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510391

TACTCCCTCCGTTCCACAAAACACCTCATATAGATTTGTGCACTTGGACCAAAGTAGCTCTCGTTTCTAGTGCCTGACCACTCATATTGGATTAGTATTAAATGGATGTGAACTATTATTGGCTGGGTGCGGGAGCCAAGAGAAAAACAAGCTATATTGTGGAACAAACCCAAAAAATCTATATGAGTTGTTTTGTGGAACGGAGGGAGTA

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