SE2550392

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1622
  • Brachypodium distachyon
  • SE2550392
  • PIF/harbinger
  • To26
  • Bd1:9371377-9371621
  • CTA
  • GGGTGTGTTTGGTTCGTGCCAAATCTAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTA              C -T     AT     ACTA       --  C    GA    GCTT     TTTTTTGGCCAACAATTTGCCAACCCTCACTTTGCCAACCATTTGGCAAGAATATGT
   GGGTGTGTTTGGTT G  GCCAA  CTAGC    CCAAATG  TG GCAA  ATTG    GCCAA                                                         
   |||||||||||||| |  |||||  |||||    |||||||  || ||||  ||||    |||||                                                         G
   CCCACACAAACCAA C  CGGTT  GATCG    GGTTTAT  AC CGTT  GGTT    AAAAA                                                         
ATC              C CT     GT     GTAC       TA  -    --    ACTA     CCGAGAACAAACCAAACAACGGTTTTTAAACCAACGGTTACACTTCATGATGAGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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