SE2520401

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1631
  • Brachypodium distachyon
  • SE2520401
  • Mutator
  • M15
  • Bd1:9242700-9242926
  • TTAATTTAA
  • TAATTTAACGGTTTTGCTATATCTAAGTTGCCTGATTTTTAGTTAGATATAAGTTGATTTCTCAGCCGTTGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T    C   TTT       C                   ---------      A        --TT  TC           ATGATT    -C  TAAGATTTGAAACATATGATGA
 TAA TTAA GGT   GCTATAT TAAGTTGCCTGATTTTTAG         TTAGAT TAAGTTGA    TC  AGCCGTTGGAT      TGTG  TT                      
 ||| |||| |||   ||||||| |||||||||||||||||||         |||||| ||||||||    ||  |||||||||||      ||||  ||                       
 ATT AATT CCA   CGATATA ATTCAACGGACTAAAAATT         AATTTA ATTCAACT    AG  TCGGCAATCTA      TCAT  AT                      
A   T    C   CAC       T                   CGTTTTCCG      G        TGTT  TC           -----A    AG  CTAGAGTAAATGGGAGAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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